PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03955.1.p
Common NameEUGRSUZ_F03955, LOC104450623
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 342aa    MW: 37760.9 Da    PI: 7.6956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03955.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.5e-29159218159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+ v++ tYegeHnh+
  Eucgr.F03955.1.p 159 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVEDQAVLVATYEGEHNHP 218
                       58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-28152219IPR003657WRKY domain
SuperFamilySSF1182909.94E-25157219IPR003657WRKY domain
PROSITE profilePS5081125.522158220IPR003657WRKY domain
SMARTSM007743.6E-34159219IPR003657WRKY domain
PfamPF031063.6E-24160218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDYSSCISTS LDLNIRPLRP HDEAPKREPQ ETDFMDLGLN TSAKEETGAL VEELNRVSAE  60
NKKLTQMLTV MCENYNTLRS QVMDYMSKNA EKELSPSKKR KCDSNNNIGE NNNNILANGA  120
SESSSTDEDS SKKPREEKIT AKISRLYVRT EASDTGLIVK DGYQWRKYGQ KVTRDNPCPR  180
AYFKCSFAPS CPVKKKVQRS VEDQAVLVAT YEGEHNHPTQ MEETQGSSRC MAIGSVPCST  240
SLNSSGPTIT LDLTKSKSPI VSPSSNNNND NNNNNNNNNN NNNSNSNSNN ITLKPKTESP  300
EIQRFLVEQM ASSLTKDPSF TAALAAAISG KIFHQNPTGK W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191582171371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03955.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063565.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH71e-97WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A059BXF10.0A0A059BXF1_EUCGR; Uncharacterized protein
STRINGPOPTR_0001s03620.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-90WRKY DNA-binding protein 40